Proteomics software and tools

Display #
Web Link
UCSF ProteinProspector
ExPASy Proteomics tools and databases
NCBI Protein tools
IntAct tools for molecular interaction data
PRIDE proteomics data repository
STRING Protein-Protein Interaction database
PhosphoSitePlus protein post-translational modification resource
PANTHER gene classification system
DAVID functional gene annotation
Cytoscape open source platform for visualizing complex networks
PeptideAtlas - public compendium of a large set of tandem mass spectrometry proteomics experiments
MassIVE - Repository of proteomics data, including old Tranche data